I ended up starting the mission over from scratch and cheating myself the keycards to get back to where I was quickly, and ran into the same issue. I was using the latest version of eduke32 so I tried again after reverting to the one that came with the mod and it seems to be stable now, so that answers the above question I guess: just leave it be!
I have a question though: how does the save system work for research and such? I picked up a "mound of skulls" artifact during the course of the level the first time but skipped over it on my recovery runs. If I aborted the mission or just started over from a "new game", does it still count as picked up, or do I need to go get it again on this save file?
Clorf
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