Metroid: Federation at War for Forces of Corruption allows players to chose to play as either the Galactic Federation with Bounty Hunter Samus Aran and Commander Adam Malkovich or play as the Space Pirates with the Evil Phazon being Dark Samus and Geoform 187, Meta-Ridley.
Space Map for Aehlis III, even has some shipyards. Imperial and Rebel fleets are there for show.
They're no match for all those Imperial ships.