I've learned entirely too many new and improved ways of doing things in UT3 over my previous workflows.
I've decided to continue my work into the abyss of the Apollyon Asylum. Only this time, I'm going to make the mod very specific, and will be practically starting over using UDK instead of the old UT3 editor. I'll be keeping many of the old assets, some I will have to modify slightly more than others, but hopefully I won't have to do that much to keep on track. I won't be doing the full story that I had intended on telling as before, but rather a chunk of that story. Most likely I will continue the story if the modding goes well. I'm tired of sitting on this any longer and have decided to get back to work.
Over and out.